tobac
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1. Installation
2. Data input and output
3. tobac themes
4. Analysis
5. Plotting
6. Example notebooks
7. API reference
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C
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F
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L
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M
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N
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P
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R
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S
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T
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W
A
add_cell_time() (in module tobac.themes.tobac_v1.tracking)
animation_mask_field() (in module tobac.plot.plotting)
area_histogram() (in module tobac.analysis.analysis)
C
calculate_area() (in module tobac.analysis.analysis)
calculate_cog() (in module tobac.analysis.centerofgravity)
calculate_cog_domain() (in module tobac.analysis.centerofgravity)
calculate_cog_untracked() (in module tobac.analysis.centerofgravity)
calculate_distance() (in module tobac.analysis.analysis)
calculate_nearestneighbordistance() (in module tobac.analysis.analysis)
calculate_overlap() (in module tobac.analysis.analysis)
calculate_velocity() (in module tobac.analysis.analysis)
calculate_velocity_individual() (in module tobac.analysis.analysis)
cell_statistics() (in module tobac.analysis.analysis)
cell_statistics_all() (in module tobac.analysis.analysis)
center_of_gravity() (in module tobac.analysis.centerofgravity)
cog_cell() (in module tobac.analysis.centerofgravity)
column_mask_from2D() (in module tobac.utils)
F
feature_detection_multithreshold() (in module tobac.themes.tobac_v1.feature_detection)
feature_detection_multithreshold_timestep() (in module tobac.themes.tobac_v1.feature_detection)
feature_detection_threshold() (in module tobac.themes.tobac_v1.feature_detection)
feature_position() (in module tobac.themes.tobac_v1.feature_detection)
fill_gaps() (in module tobac.themes.tobac_v1.tracking)
filter_min_distance() (in module tobac.themes.tobac_v1.feature_detection)
G
get_spacings() (in module tobac.utils)
H
haversine() (in module tobac.analysis.analysis)
histogram_cellwise() (in module tobac.analysis.analysis)
histogram_featurewise() (in module tobac.analysis.analysis)
L
lifetime_histogram() (in module tobac.analysis.analysis)
linking_trackpy() (in module tobac.themes.tobac_v1.tracking)
M
make_map() (in module tobac.plot.plotting)
maketrack() (in module tobac.themes.tobac_v1.wrapper)
map_tracks() (in module tobac.plot.plotting)
mask_all_surface() (in module tobac.utils)
mask_cell() (in module tobac.utils)
mask_cell_columns() (in module tobac.utils)
mask_cell_surface() (in module tobac.utils)
mask_cube() (in module tobac.utils)
mask_cube_all() (in module tobac.utils)
mask_cube_cell() (in module tobac.utils)
mask_cube_features() (in module tobac.utils)
mask_cube_untracked() (in module tobac.utils)
mask_features() (in module tobac.utils)
mask_features_surface() (in module tobac.utils)
N
nearestneighbordistance_histogram() (in module tobac.analysis.analysis)
P
plot_histogram_cellwise() (in module tobac.plot.plotting)
plot_histogram_featurewise() (in module tobac.plot.plotting)
plot_lifetime_histogram() (in module tobac.plot.plotting)
plot_lifetime_histogram_bar() (in module tobac.plot.plotting)
plot_mask_cell_individual_3Dstatic() (in module tobac.plot.plotting)
plot_mask_cell_individual_follow() (in module tobac.plot.plotting)
plot_mask_cell_individual_static() (in module tobac.plot.plotting)
plot_mask_cell_track_2D3Dstatic() (in module tobac.plot.plotting)
plot_mask_cell_track_3Dstatic() (in module tobac.plot.plotting)
plot_mask_cell_track_follow() (in module tobac.plot.plotting)
plot_mask_cell_track_static() (in module tobac.plot.plotting)
plot_mask_cell_track_static_timeseries() (in module tobac.plot.plotting)
plot_tracks_mask_field() (in module tobac.plot.plotting)
plot_tracks_mask_field_loop() (in module tobac.plot.plotting)
R
remove_parents() (in module tobac.themes.tobac_v1.feature_detection)
S
segmentation() (in module tobac.themes.tobac_v1.segmentation)
segmentation_2D() (in module tobac.themes.tobac_v1.segmentation)
segmentation_3D() (in module tobac.themes.tobac_v1.segmentation)
segmentation_timestep() (in module tobac.themes.tobac_v1.segmentation)
T
test_overlap() (in module tobac.themes.tobac_v1.feature_detection)
tobac.analysis.analysis (module)
tobac.analysis.centerofgravity (module)
tobac.plot.plotting (module)
tobac.themes.tobac_v1.feature_detection (module)
tobac.themes.tobac_v1.segmentation (module)
tobac.themes.tobac_v1.tracking (module)
tobac.themes.tobac_v1.wrapper (module)
tobac.utils (module)
tracking_wrapper() (in module tobac.themes.tobac_v1.wrapper)
V
velocity_histogram() (in module tobac.analysis.analysis)
W
watershedding_2D() (in module tobac.themes.tobac_v1.segmentation)
watershedding_3D() (in module tobac.themes.tobac_v1.segmentation)
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